Survival-associated meQTLs across different cancer types
We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
|
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
|---|---|---|---|---|---|---|---|---|---|
| PAAD | rs139924703 | chr1:227519924 | G/A | 3.26E-5 | 177 | 15.4 | 15.87 | 3.9 | KM Plot |
| PAAD | rs140075367 | chr2:128508311 | T/C | 7.9E-10 | 178 | 15.62 | 12.6 | 2.2 | KM Plot |
| PAAD | rs140127045 | chr1:16828968 | C/T | 1.17E-5 | 170 | 15.43 | 16.03 | 4.62 | KM Plot |
| PAAD | rs140161357 | chr1:227367128 | G/C | 3.69E-5 | 177 | 15.53 | 15.43 | 3.9 | KM Plot |
| PAAD | rs140287121 | chr17:39101518 | C/CT | 2.4E-5 | 173 | 15.33 | 16.6 | 5.97 | KM Plot |
| PAAD | rs140417831 | chr11:125574270 | C/T | 0.000112 | 177 | 16.08 | 14.18 | 5.03 | KM Plot |
| PAAD | rs140426665 | chr4:78454270 | T/G | 2.53E-5 | 178 | 15.57 | 14.63 | 3.9 | KM Plot |
| PAAD | rs140453267 | chr1:200582043 | T/C | 0 | 171 | 15.33 | 16.07 | 1.03 | KM Plot |
| PAAD | rs140714709 | chr17:40310650 | G/A | 8.84E-5 | 177 | 15.57 | 13.8 | 4 | KM Plot |
| PAAD | rs141069329 | chr11:125578548 | C/CA | 0.000112 | 177 | 16.08 | 14.18 | 5.03 | KM Plot |
| PAAD | rs141256717 | chr1:114849488 | A/G | 0 | 174 | 0.4 | 15.63 | 15.57 | KM Plot |
| PAAD | rs141290240 | chr2:70513648 | C/CT | 0 | 177 | 15.37 | 17.32 | 1.03 | KM Plot |
| PAAD | rs141529624 | chr1:227397927 | G/A | 3.22E-5 | 178 | 15.55 | 15.43 | 3.9 | KM Plot |
| PAAD | rs141557980 | chr2:128501154 | GA/G | 7.9E-10 | 178 | 15.62 | 12.6 | 2.2 | KM Plot |
| PAAD | rs141588608 | chr5:127447505 | C/CAT | 0.000152 | 178 | 16.17 | 13.95 | 7.87 | KM Plot |